PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01725.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 338aa    MW: 39001.5 Da    PI: 8.0416
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01725.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.21.6e-109420919128
                      NAM  19 LkkkvegkkleleevikevdiykvePwdLpk........kvka.eekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevl 93 
                              ++k +++++l  + +i+e+d+yk  Pw   +        + ++  +++ yf s+++kk+  g+r  r++    g+Wk+  k +e+ 
  Sme2.5_01725.1_g00009.1  94 MTKFTAQQPLCDDGFITELDVYKQPPWITYSygrhsrggRPQHdMTTDRYFISPNHKKK--GRRICRTVGegIGRWKQREKYEEIN 177
                              555566666666678************88634666655422221233679999998875..78999987723567******99998 PP

                      NAM  94 skkgelvglkktLvfykgrapkge..ktdWvmheyrl 128
                              +      g k++Lv+ + +  +g   + +W+m+ey l
  Sme2.5_01725.1_g00009.1 178 N-----RGRKTSLVYESTSCARGDwnNGKWIMKEYLL 209
                              8.....789******98776666544889******76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM000153.2E-45173IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.9085281IPR000048IQ motif, EF-hand binding site
PfamPF006126.3E-55673IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5100512.25176233IPR003441NAC domain
SuperFamilySSF1019414.84E-1097216IPR003441NAC domain
PfamPF023653.8E-6118208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MENPFYGGYW SQQKPAGIKL AGKVIQIPVQ FVSLDLEPVV SASTIQLPEP DRSALALKIQ  60
KVFRGFLVRK RVKKIISIRK EVEDVERKLL CSEMTKFTAQ QPLCDDGFIT ELDVYKQPPW  120
ITYSYGRHSR GGRPQHDMTT DRYFISPNHK KKGRRICRTV GEGIGRWKQR EKYEEINNRG  180
RKTSLVYEST SCARGDWNNG KWIMKEYLLS DTLLRKFNKS VYKDYAIFAI KKTSKNQRVV  240
DTGCIHLMAE QIEEDACVLF GLTSSSSHQI EEESRLTSSS SHQIEECMMP DFEKLRLENN  300
DPDQTMGETV LEKKQAQQEE SKLVDDLVEA MVELEVDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.15e-06NAC domain containing protein 2